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Bioinformatics. 2011 Mar 1;27(5):723-4. doi: 10.1093/bioinformatics/btq720. Epub 2010 Dec 24.

Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure.

Author information

1
Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.

Abstract

We present Voroprot, an interactive cross-platform software tool that provides a unique set of capabilities for exploring geometric features of protein structure. Voroprot allows the construction and visualization of the Apollonius diagram (also known as the additively weighted Voronoi diagram), the Apollonius graph, protein alpha shapes, interatomic contact surfaces, solvent accessible surfaces, pockets and cavities inside protein structure.

AVAILABILITY:

Voroprot is available for Windows, Linux and Mac OS X operating systems and can be downloaded from http://www.ibt.lt/bioinformatics/voroprot/.

PMID:
21186248
DOI:
10.1093/bioinformatics/btq720
[Indexed for MEDLINE]

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