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Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21152-7. doi: 10.1073/pnas.1015264107. Epub 2010 Nov 15.

Intron retention facilitates splice variant diversity in calcium-activated big potassium channel populations.

Author information

1
Department of Pharmacology, Penn Genome Frontiers Institute, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.

Abstract

We report that the stress axis-regulated exon (STREX)-containing calcium-activated big potassium (BKCa) channel splice variant expression and physiology are regulated in part by cytoplasmic splicing and intron retention. NextGen sequencing of the mRNA complement of pooled hippocampal dendrite samples found intron 17a (i17a), the intron immediately preceding STREX, in the BKCa mRNA. Further molecular analyses of i17a revealed that the majority of i17a-containing BKCa channel mRNAs associate with STREX. i17a siRNA treatment followed by STREX protein immunocytochemistry demonstrated both reduced levels and altered subcellular distribution of STREX-containing BKCa channel protein. Selective reduction of i17a-BKCa or STREX-BKCa mRNAs induced similar changes in the burst firing properties of hippocampal neurons. Collectively, these data show that STREX splice variant regulation via cytoplasmic splicing and intron retention helps generate STREX-dependent BKCa current diversity in hippocampal neurons.

PMID:
21078998
PMCID:
PMC3000244
DOI:
10.1073/pnas.1015264107
[Indexed for MEDLINE]
Free PMC Article

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