3D-structures of selected EF-hand Ca²⁺ buffers. (A) Consensus sequence of the canonical EF-hand Ca²⁺-binding loop of 12 amino acids. Amino acids X, Y, Z, and –Z provide side-chain oxygen ligands, * provides the backbone carbonyl oxygen, and at –X, a water molecule is hydrogen-bonded to a loop residue. Amino acids most often present at a given position are shown below, and shaded residues are the most conserved ones (). At positions X and –Z, Asp (D) and Glu (E) are generally present, respectively. The seven oxygen ligands coordinating the Ca²⁺ ion are located at the seven corners of a pentagonal bipyramid, and the Ca²⁺ ion (not shown) is in the center (right). (B) Solution structure of Ca²⁺-bound human α PV; PDB: 1RJV. Both the CD domain (green) and EF domain (yellow/red) bind one Ca²⁺ ion each (green spheres) in canonical Ca²⁺-binding loops of 12 amino acids. The orthogonally oriented helices E and F (gray-shaded) are connected by the Ca²⁺-binding loop. Both Ca²⁺-binding sites in PV are of the Ca²⁺/Mg²⁺ mixed type. The N-terminal AB domain (blue) is necessary for protein stability. (C) NMR solution structure of bovine CB-D9k; PDB: 1B1G. The shown structure takes into account the Ca²⁺ ions and explicit solvent molecules. The N-terminal domain EF1 is a pseudo (Ψ) EF-hand with a larger loop of 14 amino acids, while the second domain (EF2) has a canonical Ca²⁺-binding loop of 12 amino acids. In both loops, the Glu residue at the position –Z with the 2 carboxyl oxygen atoms (red) serves as a bidentate ligand representing two corners of the pentagonal bipyramid. This residue, most often Glu (rarely Asp), is a critical determinant for the Ca²⁺ affinity of the entire loop; Ca²⁺ ions are shown as green spheres. The two Ca²⁺-binding loops are in close proximity and stabilized via short β-type interactions (gray-shaded area). (D) 3D NMR structure of CB-D28k; PDB: 2G9B. CB-D28k has a relatively compact structure comprising three Ca²⁺-binding units, each unit consisting of a pair of EF-hands. Ca²⁺-binding is restricted to the Ca²⁺-binding loop 1 in the N-terminal unit (blue), to both loops 3 and 4 in the middle unit (green), and to loop 5 in the C-terminal pair (yellow/red). EF-hands 2 and 6 are nonfunctional, with respect to Ca²⁺-binding. The Ca²⁺-binding loops flanked by two almost perpendicular alpha-helical regions are numbered from 1 to 6. Images B–D were generated with PDB ProteinWorkshop 1.50 ().

Homeostatic/adaptive changes in the soma of Purkinje cells (PC) caused by malfunctioning or elimination of Ca²⁺-signaling toolkit component(s); regulation by the Ca²⁺ homeostasome. (A) A detailed situation is depicted for wild-type mice. Increases in [Ca²⁺]_i (red arrows) result from influx via Ca_V2.1 (P/Q) channels or release from internal stores (light blue) via the IP₃ receptor. IP₃ is generated by the activation of metabotropic glutamate receptors (mGluR). Ca²⁺ removal systems (blue arrows) include PMCA and NCX in the plasma membrane, SERCA pumps, and mitochondria (green). Identified Ca²⁺-signaling toolkit components including organelles, which are up- or down-regulated, are marked in yellow and magenta, respectively. (B) In PV^−/−, PC subplasmalemmal mitochondria are increased, while ER volume directly underneath the plasma membrane is decreased. (C) In addition to the changes observed in PV^−/−, in PC lacking both, PV and CB-D28k the auxiliary Ca_vβ2a subunit of Ca_V2.1 (P/Q), is decreased, leading to increased voltage-dependent inactivation of P-type currents. Model studies indicate an up-regulation of Ca²⁺ extrusion systems, possibly PMCA. (D) In PMCA2^−/− PC, expression of mGluR1 and of IP₃ receptor type 1 (IP3R1), responsible for the Ca²⁺ release from ER stores, is decreased. Also, the cytosolic Ca²⁺ buffering capacity mediated by CB-D28k is decreased. (E) In leaner mice PC that are characterized by strongly attenuated Ca_v2.1 Ca²⁺ channel function, the rapid Ca²⁺ buffering/sequestering capacity is reduced: PV and CB-D28k are down-regulated and (subplasmalemmal) ER is decreased/impaired, leading to reduced Ca²⁺ uptake.