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Bioinformatics. 2010 Nov 15;26(22):2910-1. doi: 10.1093/bioinformatics/btq539. Epub 2010 Sep 21.

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

Author information

1
Department of Statistics, University of Wisconsin-Madison, WI 53706, USA.

Abstract

MOTIVATION:

BUCKy is a C++ program that implements Bayesian concordance analysis. The method uses a non-parametric clustering of genes with compatible trees, and reconstructs the primary concordance tree from clades supported by the largest proportions of genes. A population tree with branch lengths in coalescent units is estimated from quartet concordance factors.

AVAILABILITY:

BUCKy is open source and distributed under the GNU general public license at www.stat.wisc.edu/∼ane/bucky/.

PMID:
20861028
DOI:
10.1093/bioinformatics/btq539
[Indexed for MEDLINE]

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