A–B, Representative urine bacterial titer time course over 4 wpi with 10⁷ cfu UTI89 Kan^R in A, C57BL/6J and B, C3H/HeN mice. Solid lines connect the urine titers over time for each individual mouse. Dashed horizontal line represents the cutoff for significant bacteriuria in free catch urines: 10⁴ cfu/ml. C–D, Urine (U), bladder (B) and kidney (K) titers of C, C57BL/6J and D, C3H/HeN mice at 4 wpi with 10⁷ or 10⁸ cfu UTI89 Kan^R or UTI89, grouped by outcome: resolved bacteriuria (Resolved) or persistent bacteriuria (PB). Solid lines connect the different urine and tissue titers from the same mouse. Dotted horizontal lines show the limits of detection. E–H, Paraffin-embedded bladder sections 4 wpi with UTI89 Kan^R were examined by E–F, Hematoxylin & eosin (H&E) staining and light microscopy, or G–H, indirect immunofluorescence (IF) microscopy, staining with antibodies against E. coli (green) and uroplakin III (red); nuclei are counterstained with bis-benzimide (blue). Bladder sections from mice that resolved bacteriuria are displayed in panels E and G; from persistently bacteriuric mice in panels F and H. In panel H, arrows indicate luminal clusters of bacteria associated with immune and exfoliated urothelial cells. I–J, Frozen sections of the bladder of a persistently bacteriuric C3H/HeN mouse at 7.5 months post-infection with UTI89 were examined: I, H&E stained section of the trigone region (area of bladder near urethra where ureters enter), J, IF micrograph of a serial section of I, staining for CD45 (red) and the FimH adhesin of E. coli (green); nuclei are counterstained with bis-benzimide (blue). In panels E–J, bars approximate 50µm, “L” indicates bladder lumen, and dashed line denotes the approximate location of the urothelial basement membrane.

C3H/HeOuJ (closed circles) or C3H/HeJ (open circles) mice were infected with 10⁷ cfu UTI89 Kan^R and followed for 4 wpi. Data were compiled from two independent experiments. A, Urine bacterial titers were assayed over 4 wpi. Solid lines connect the urine titers over time for each individual mouse. Dashed horizontal line represents the cutoff for significant bacteriuria in free catch urines: 10⁴ cfu/ml. B–C, B, Bladder and C, Kidney titers were assayed at 4 wpi; D, Bladders with high bacterial burdens (>10⁴ cfu from panel B) were weighed at 4 wpi. All statistics in panels B, C, and D are the results of a two-tailed Mann-Whitney U test: **, P<0.01, ***, P<0.001 and ns, not significant; horizontal bars indicate median values.

Representative paraffin-embedded, fixed bladder sections from C3H/HeOuJ mice with chronic cystitis (22 out of 24 mice; panels A, D, & G), C3H/HeJ mice with high bacterial burdens and evidence of bladder inflammation (5 out of 20 mice; panels B, E, & H), and the remaining C3H/HeJ mice that uniformly lacked evidence of bladder inflammation (15 out of 20 mice; panels C, F, & I) were analyzed at 4 wpi; Bars approximate 50 µm in length. A–F, Sections were stained with hematoxylin & eosin and examined by light microscopy; boxes in panels A–C demarcate boundaries of higher magnification images in panels D–F. G–I, Sections were analyzed by indirect immunofluorescence (IF) microscopy, staining for E. coli (green) and uroplakin III (red), with nuclei counterstained with bis-benzimide (blue). “L” denotes bladder lumen; dashed line indicates approximate location of basement membrane; arrowheads point to urothelial surface bacterial colonization in panel E; and the white arrow points to a mature superficial facet cell containing a possible IBC in panel H.

A–C, Parameters of acute infection and inflammation were assayed in mice that either resolved bacteriuria (R, open circles) or developed persistent bacteriuria (PB, open triangles). A, Urine bacterial titers were assayed at 24 hpi with 10⁷ cfu of UTI89 Kan^R or UTI89; data is compiled from seven independent experiments (n = 92 mice). B, Urine sediments at 24 hpi with either 10⁷ or 10⁸ cfu of UTI89 Kan^R or UTI89 were analyzed and assigned a semi-quantitative polymorphonuclear cell (PMN) score from 0–4 as explained in the ; data is compiled from 6 independent experiments (n = 123 mice). C, Mice were weighed at every urine collection time point in most studies. Plot depicts the weight loss or gain at 1 and 28 days post-infection (dpi) with 10⁸ cfu UTI89 Kan^R; data is compiled from two independent experiments (n = 42 mice). D, Mouse sera collected at 24 hpi with either PBS (Mock) or 10⁸ cfu UTI89 Kan^R infected mice were analyzed for the presence of 23 cytokines by cytometric bead array as described in the . UPEC infected mice were then grouped by disease outcome: resolved bacteriuria (Resolved), or persistently bacteriuric (PB). These four cytokines were significantly elevated in PB mice in each of three independent experiments; data shown is from one representative experiment. All statistics are by Mann-Whitney U two-tailed test: *, P<0.05, **, P<0.01, ***, P<0.001 and ns, not significant; horizontal bars indicate median values.

Individual C3H/HeN mice were infected with either 10⁷ or 10⁸ cfu of UTI89 and bladders and sera collected at 24 hpi in two independent experiments. Data shown are from one representative experiment. A, Paraffin-embedded, fixed bladder sections were stained with hematoxylin & eosin and examined by light microscopy. Sections were scored from 0–5 to quantify the severity of inflammatory lesions as explained in the ; horizontal bars indicate median values. B, Examples are shown of the disparate response to UPEC infection in two individual mice from the same cage, infected on the same day with the same inoculum (10⁷ cfu UTI89). C–D, Higher magnification images of the two bladders shown in panel B. Inflammatory scores were 3 and 5 for panels C and D, respectively. Bars approximate 50 µm in length. E, Scatter plot analysis of serum IL-5, IL-6, G-CSF, and KC values, as labeled, versus the inflammatory scores of the bladders from the same individual mice. Significance (P) and strength (ρ) of correlations shown were determined by Spearman's rank correlation test.

C3H/HeSnJ (closed circles) or C3SnSmn.CB17-Prkcscid/J (C3Hscid, open circles) mice were infected with 10⁸ cfu of UTI89 Kan^R or UTI89. A, Urine and tissue titers were assayed at 4 wpi; solid lines connect the different urine and tissue titers from the same mouse. B, PMN scores of the urine sediments were determined at 24 hpi. The data shown in panels A and B were compiled from four independent experiments. C, Sera were collected for cytokine analysis at 24 hpi. Data are representative of two independent experiments. All statistics in panels B–C are the results of the Mann-Whitney U test: **, P<0.01, ***, P<0.001 and ns, not significant, horizontal bars indicate median values. D–E, Representative paraffin-embedded, fixed bladder sections from D, C3H/HeSnJ, and E, C3Hscid mice, at 24 hpi were stained with hematoxylin & eosin and examined by light microscopy. Asterisks indicate areas of submucosal edema, arrows indicate apparent IBCs, and bars approximate 50 µm in length.

C3H/HeN mice were treated with either saline (closed circles) or 200 µg dexamethasone sodium phosphate (open circles) two hours prior to infection with 10⁸ cfu UTI89 Kan^R. A, urine (U), bladder (B) and kidney (K) titers were determined at 4 wpi; solid lines connect the different urine and tissue titers from the same mouse. B, PMN scores of the urine sediments were determined 24 hpi. A–B, Data are compiled from three independent experiments. C, Percent weight change at 24 hpi was determined. D, Serum cytokine analysis of mice at 24 hpi with 10⁸ cfu of UTI89 Kan^R is depicted. C–D, Data are compiled from four independent experiments. E–G, C3H/HeN mice pre-treated with either saline or dexamethasone were sacrificed at 24 hpi and paraffin-embedded, fixed bladder sections were stained with hematoxylin & eosin and examined by light microscopy. Semi-quantative bladder inflammatory scores are plotted in panel E, and representative images of bladders from mice treated with F, saline, and G, dexamethasone, are depicted; arrowheads indicate apparent IBCs; bars approximate 50 µm in length. All statistics in panels B–E are the results of the Mann-Whitney U test: *, P<0.05, **, P<0.01, and ***, P<0.001; horizontal bars indicate median values.

A–D, Mice were infected with 10⁷ UTI89 Kan^R or mock-infected with PBS and followed for 4 wpi by longitudinal urinalysis in two independent experiments. All mice were treated with antibiotics at 4 wpi and sacrificed 4 weeks after initiation of antibiotic therapy. Paraffin-embedded, fixed bladder sections were stained with hematoxylin & eosin and examined by light microscopy. Representative images of mice that A, were mock-infected, B, had resolved bacteriuria, or C, had persistent bacteriuria are shown; bars approximate 50 µm in length. Statistics are the results of the Mann-Whitney U test: **, P<0.01, and ***, P<0.001. D, Bladders were weighed at sacrifice; horizontal bars indicate median values. E, Experimental time line for panel F: mice were followed by longitudinal urinalysis (each urine collection is indicated by small arrow) for the entire experiment to identify persistently bacteriuric mice prior to antibiotic therapy and after re-infection, and to confirm clearance of bacteriuria with antibiotic therapy. F–H, Combined time courses from two independent experiments each are displayed, charting the UTI89 Spc^R urine bacterial titers during the 4 weeks after challenge infection, when antibiotic therapy was initiated at F, 28 days, G, 14 days, or G, 1 day after the initial infection. In all cases, mice were challenged 4 weeks after the initiation of antibiotic therapy. For panels F and G, mice are grouped by the outcome of urinalysis during the initial infection: Mock, mock-infected with PBS at week 0; Resolved Bacteriuria, infected with UTI89 Kan^R at week 0 and subsequently had at least one time point with <10⁴ cfu/ml UTI89 Kan^R; or Persistent Bacteriuria, infected with UTI89 Kan^R at week 0 and had >10⁴ cfu/ml UTI89 Kan^R for each time point. For panel H, mice are grouped by serum KC value at 24 hpi with UPEC: Mock, mock-infected with PBS at week 0; Resolved Bacteriuria, infected with UTI89 Kan^R at week 0 and have serum KC in the lower 50% of values at 24 hpi; or Persistent Bacteriuria, infected with UTI89 Kan^R at week 0 and had serum KC in the upper 50% of values at 24 hpi. Solid lines connect the urine titers over time for each individual mouse. Horizontal dashed lines represent the cutoff for significant bacteriuria in free catch urines: 10⁴ cfu/ml.