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Bioinformatics. 2010 Oct 1;26(19):2486-7. doi: 10.1093/bioinformatics/btq464. Epub 2010 Aug 12.

Text mining meets workflow: linking U-Compare with Taverna.

Author information

1
Department of Computer Science, The University of Tokyo Hongo 7-3-1, Bunkyo-ku, Tokyo, 113-0033 Japan. kano@is.s.u-tokyo.ac.jp

Abstract

Text mining from the biomedical literature is of increasing importance, yet it is not easy for the bioinformatics community to create and run text mining workflows due to the lack of accessibility and interoperability of the text mining resources. The U-Compare system provides a wide range of bio text mining resources in a highly interoperable workflow environment where workflows can very easily be created, executed, evaluated and visualized without coding. We have linked U-Compare to Taverna, a generic workflow system, to expose text mining functionality to the bioinformatics community.

AVAILABILITY:

http://u-compare.org/taverna.html, http://u-compare.org.

PMID:
20709690
PMCID:
PMC2944208
DOI:
10.1093/bioinformatics/btq464
[Indexed for MEDLINE]
Free PMC Article

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