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Bioinformatics. 2010 Oct 1;26(19):2490-2. doi: 10.1093/bioinformatics/btq362. Epub 2010 Jul 3.

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins.

Author information

1
Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Panepistimiopolis Athens, Greece.

Abstract

ExTopoDB is a publicly accessible database of experimentally derived topological models of transmembrane proteins. It contains information collected from studies in the literature that report the use of biochemical methods for the determination of the topology of α-helical transmembrane proteins. Transmembrane protein topology is highly important in order to understand their function and ExTopoDB provides an up to date, complete and comprehensive dataset of experimentally determined topologies of α-helical transmembrane proteins. Topological information is combined with transmembrane topology prediction resulting in more reliable topological models.

AVAILABILITY:

http://bioinformatics.biol.uoa.gr/ExTopoDB.

PMID:
20601677
DOI:
10.1093/bioinformatics/btq362
[Indexed for MEDLINE]

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