Format

Send to

Choose Destination
Bioinformatics. 2010 Aug 15;26(16):2057-9. doi: 10.1093/bioinformatics/btq321. Epub 2010 Jun 18.

Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels.

Author information

1
Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, Strasbourg, France. f.jossinet@ibmc-cnrs.unistra.fr

Abstract

SUMMARY:

Assemble is an intuitive graphical interface to analyze, manipulate and build complex 3D RNA architectures. It provides several advanced and unique features within the framework of a semi-automated modeling process that can be performed by homology and ab initio with or without electron density maps. Those include the interactive editing of a secondary structure and a searchable, embedded library of annotated tertiary structures. Assemble helps users with performing recurrent and otherwise tedious tasks in structural RNA research.

AVAILABILITY AND IMPLEMENTATION:

Assemble is released under an open-source license (MIT license) and is freely available at http://bioinformatics.org/assemble. It is implemented in the Java language and runs on MacOSX, Linux and Windows operating systems.

PMID:
20562414
PMCID:
PMC2916716
DOI:
10.1093/bioinformatics/btq321
[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for Silverchair Information Systems Icon for PubMed Central
Loading ...
Support Center