Format

Send to

Choose Destination
See comment in PubMed Commons below
Bioinformatics. 2010 Jul 15;26(14):1779-80. doi: 10.1093/bioinformatics/btq282. Epub 2010 May 28.

geWorkbench: an open source platform for integrative genomics.

Author information

1
Center for Computational Biology and Bioinformatics, Columbia University, 1130 St. Nicholas Ave, New York, NY 10032, USA. geworkbench@c2b2.columbia.edu

Abstract

SUMMARY:

geWorkbench (genomics Workbench) is an open source Java desktop application that provides access to an integrated suite of tools for the analysis and visualization of data from a wide range of genomics domains (gene expression, sequence, protein structure and systems biology). More than 70 distinct plug-in modules are currently available implementing both classical analyses (several variants of clustering, classification, homology detection, etc.) as well as state of the art algorithms for the reverse engineering of regulatory networks and for protein structure prediction, among many others. geWorkbench leverages standards-based middleware technologies to provide seamless access to remote data, annotation and computational servers, thus, enabling researchers with limited local resources to benefit from available public infrastructure.

AVAILABILITY:

The project site (http://www.geworkbench.org) includes links to self-extracting installers for most operating system (OS) platforms as well as instructions for building the application from scratch using the source code [which is freely available from the project's SVN (subversion) repository]. geWorkbench support is available through the end-user and developer forums of the caBIG Molecular Analysis Tools Knowledge Center, https://cabig-kc.nci.nih.gov/Molecular/forums/

PMID:
20511363
PMCID:
PMC2894520
DOI:
10.1093/bioinformatics/btq282
[Indexed for MEDLINE]
Free PMC Article
PubMed Commons home

PubMed Commons

0 comments
How to join PubMed Commons

    Supplemental Content

    Full text links

    Icon for Silverchair Information Systems Icon for PubMed Central
    Loading ...
    Support Center