Straight-chain non-polar amino acids are good helix-formers in water

J Mol Biol. 1991 May 20;219(2):135-7. doi: 10.1016/0022-2836(91)90553-i.

Abstract

For comparison with earlier data on naturally occurring non-polar amino acids (Ala, Leu, Phe, Val, Ile), the comparative helix-forming tendencies have been measured for non-polar amino acid residues that have unbranched side-chains, with an ethyl, propyl or butyl group, and also for methionine. The substitutions are made in a 17-residue alanine-based peptide. The results show that straight-chain non-polar amino acids have high helix-forming tendencies compared to beta-branched non-polar amino acids. Restriction of side-chain conformations in the helix, with a corresponding reduction in conformational entropy, is the likely explanation. There is a small increase in helix-forming tendency as the side-chain increases in length from ethyl to butyl, which suggests that a helix-stabilizing hydrophobic interaction is being detected.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alanine / chemistry
  • Amino Acid Sequence
  • Amino Acids / chemistry*
  • Circular Dichroism
  • Isoleucine / chemistry
  • Leucine / chemistry
  • Molecular Sequence Data
  • Peptides / chemistry*
  • Phenylalanine / chemistry
  • Protein Conformation*
  • Valine / chemistry
  • Water

Substances

  • Amino Acids
  • Peptides
  • Isoleucine
  • Water
  • Phenylalanine
  • Leucine
  • Valine
  • Alanine