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Bioinformatics. 2010 Apr 1;26(7):979-81. doi: 10.1093/bioinformatics/btq046.

EBImage--an R package for image processing with applications to cellular phenotypes.

Author information

1
EMBL-European Bioinformatics Institute, Cambridge, UK. gregoire.pau@ebi.ac.uk

Abstract

SUMMARY:

EBImage provides general purpose functionality for reading, writing, processing and analysis of images. Furthermore, in the context of microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and use of existing tools in the R environment for signal processing, statistical modeling, machine learning and data visualization.

AVAILABILITY:

EBImage is free and open source, released under the LGPL license and available from the Bioconductor project (http://www.bioconductor.org/packages/release/bioc/html/EBImage.html).

PMID:
20338898
PMCID:
PMC2844988
DOI:
10.1093/bioinformatics/btq046
[Indexed for MEDLINE]
Free PMC Article

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