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Proteomics. 2010 Apr;10(7):1522-4. doi: 10.1002/pmic.200900759.

XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.

Author information

1
Leibniz-Institut für Analytische Wissenschaften - ISAS - eV- Institute for Analytical Sciences, Dortmund, Germany.

Erratum in

  • Proteomics. 2010 Jul;10(13):2560.

Abstract

Identification of proteins by MS plays an important role in proteomics. A crucial step concerns the identification of peptides from MS/MS spectra. The X!Tandem Project (http://www.thegpm.org/tandem) supplies an open-source search engine for this purpose. In this study, we present an open-source Java library called XTandem Parser that parses X!Tandem XML result files into an easily accessible and fully functional object model (http://xtandem-parser.googlecode.com). In addition, a graphical user interface is provided that functions as a usage example and an end-user visualization tool.

PMID:
20140905
DOI:
10.1002/pmic.200900759
[Indexed for MEDLINE]

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