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Proteomics. 2010 Mar;10(5):1087-90. doi: 10.1002/pmic.200900681.

FragmentationAnalyzer: an open-source tool to analyze MS/MS fragmentation data.

Author information

1
Department of Informatics, University of Bergen, Bergen, Norway. Harald.Barsnes@ii.uib.no

Erratum in

  • Proteomics. 2010 Jul;10(13):2560.

Abstract

A thorough understanding of the fragmentation processes in MS/MS can be a powerful tool in assessing the resulting peptide and protein identifications. We here present the freely available, open-source FragmentationAnalyzer tool (http://fragmentation-analyzer.googlecode.com) that makes it straightforward to analyze large MS/MS data sets for specific types of identified peptides, using a common set of peptide properties. This enables the detection of fragmentation pattern nuances related to specific instruments or due to the presence of post-translational modifications.

PMID:
20049869
DOI:
10.1002/pmic.200900681
[Indexed for MEDLINE]

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