Format

Send to

Choose Destination
See comment in PubMed Commons below
Bioinformatics. 2010 Feb 1;26(3):399-400. doi: 10.1093/bioinformatics/btp688. Epub 2009 Dec 14.

sORF finder: a program package to identify small open reading frames with high coding potential.

Author information

1
Plant Science Center, RIKEN, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan. kohanada@psc.riken.jp

Abstract

SUMMARY:

sORF finder is a program package for identifying small open reading frames (sORFs) with high-coding potential. This application allows the identification of coding sORFs according to the nucleotide composition bias among coding sequences and the potential functional constraint at the amino acid level through evaluation of synonymous and non-synonymous substitution rates.

AVAILABILITY:

Online tools and source codes are freely available at http://evolver.psc.riken.jp/.

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

PMID:
20008477
DOI:
10.1093/bioinformatics/btp688
[Indexed for MEDLINE]
PubMed Commons home

PubMed Commons

0 comments

    Supplemental Content

    Full text links

    Icon for Silverchair Information Systems
    Loading ...
    Support Center