Ribosome-binding site interference caused by Shine-Dalgarno-like nucleotide sequences in Escherichia coli cells

J Biochem. 2010 Mar;147(3):433-43. doi: 10.1093/jb/mvp187. Epub 2009 Nov 11.

Abstract

Two-cistronic expression plasmids are useful for high-level expression of heterologous genes in Escherichia coli cells by preventing the inhibition of translational initiation. In the process of constructing a two-cistronic expression plasmid pCbSTCR-4 containing the fragments of the porcine cytochrome b(5) (Psb5) and NADPH-cytochrome P450 reductase (PsCPR) genes as the first and second cistrons, respectively, the presence of a specific region in the first cistron that lowered the accumulation level of the PsCPR was suggested [Kimura, S., et al. (2005) J. Biochem. 137, 523-533]. In this study, a disturbing nucleotide sequence similar to a Shine-Dalgarno (SD) sequence (SD-like sequence), AGGAG, was identified at the 5'-upstream region near the SD sequence for the second cistron. Silent mutations in the SD-like sequence that lowered the similarity to a typical SD sequence increased the accumulation level of PsCPR. SD-like sequences introduced into mono-cistronic expression plasmids for the Psb5 and PsCPR genes also decreased the accumulation level of these proteins. The SD-like sequence also decreased the accumulation level of the insoluble PsCPR protein. This type of ribosome-binding site interference is useful not only for precise control of protein accumulation but also for increasing the soluble form of recombinant proteins in E. coli cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Binding Sites / genetics
  • Cytochromes b5 / biosynthesis
  • Cytochromes b5 / genetics
  • DNA / genetics
  • DNA / metabolism
  • Escherichia coli / metabolism*
  • Gene Expression Regulation
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • NADPH-Ferrihemoprotein Reductase / biosynthesis
  • NADPH-Ferrihemoprotein Reductase / genetics
  • Plasmids / genetics
  • Protein Biosynthesis
  • Recombinant Proteins / biosynthesis
  • Recombinant Proteins / genetics
  • Regulatory Sequences, Nucleic Acid*
  • Ribosomes / metabolism*
  • Swine

Substances

  • Recombinant Proteins
  • DNA
  • Cytochromes b5
  • NADPH-Ferrihemoprotein Reductase