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Bioinformatics. 2010 Jan 1;26(1):147-8. doi: 10.1093/bioinformatics/btp597. Epub 2009 Oct 16.

GeneE: gene and protein query expansion with disambiguation.

Author information

1
Department of Medical Informatics, Erasmus University Medical Center Rotterdam, P.O. Box 2040, 3000 CA, Rotterdam, The Netherlands. m.schuemie@erasmusmc.nl

Abstract

SUMMARY:

When referring to genes, authors often use synonyms instead of the official gene symbols. In order to accurately retrieve as many relevant documents as possible, we have developed GeneE, a web application that expands a gene query to include all known synonyms, and adds disambiguation information for ambiguous terms, before forwarding the query to either PubMed, Google or Jane. The query expansion algorithm is also available as a web service.

AVAILABILITY:

http://biosemantics.org/geneE

PMID:
19837720
DOI:
10.1093/bioinformatics/btp597
[Indexed for MEDLINE]
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