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Bioinformatics. 2009 Oct 1;25(19):2607-8. doi: 10.1093/bioinformatics/btp450. Epub 2009 Aug 3.

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.

Author information

1
Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. mtmorgan@fhcrc.org

Abstract

ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

AVAILABILITY AND IMPLEMENTATION:

This package is implemented in R and available at the Bioconductor web site; the package contains a 'vignette' outlining typical work flows.

PMID:
19654119
PMCID:
PMC2752612
DOI:
10.1093/bioinformatics/btp450
[Indexed for MEDLINE]
Free PMC Article

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