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Bioinformatics. 2009 Oct 15;25(20):2755-7. doi: 10.1093/bioinformatics/btp408. Epub 2009 Jul 3.

FBA-SimVis: interactive visualization of constraint-based metabolic models.

Author information

1
Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben and Institute of Computer Science, Martin-Luther-University Halle-Wittenberg, Germany. grafahr@ipk-gatersleben.de

Abstract

FBA-SimVis is a VANTED plug-in for the constraint-based analysis of metabolic models with special focus on the visual exploration of metabolic flux data resulting from model analysis. The program provides a user-friendly environment for model reconstruction, constraint-based model analysis, and interactive visualization of the simulation results. With the ability to quantitatively analyse metabolic fluxes in an interactive and visual manner, FBA-SimVis supports a comprehensive understanding of constraint-based metabolic flux models in both overview and detail.

AVAILABILITY:

Software with manual and tutorials are freely available at http://fbasimvis.ipk-gatersleben.de/

PMID:
19578041
PMCID:
PMC2759546
DOI:
10.1093/bioinformatics/btp408
[Indexed for MEDLINE]
Free PMC Article

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