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Bioinformatics. 2009 Sep 15;25(18):2434-5. doi: 10.1093/bioinformatics/btp403. Epub 2009 Jul 2.

SNP-o-matic.

Author information

1
Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK. mm6@sanger.ac.uk

Abstract

MOTIVATION:

High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. SNP-o-matic is a fast, memory-efficient and stringent read mapping tool offering a variety of analytical output functions, with an emphasis on genotyping.

AVAILABILITY:

http://snpomatic.sourceforge.net.

PMID:
19574284
PMCID:
PMC2735664
DOI:
10.1093/bioinformatics/btp403
[Indexed for MEDLINE]
Free PMC Article

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