Sequence determinants of thermodynamic stability in a WW domain--an all-beta-sheet protein

Protein Sci. 2009 Aug;18(8):1806-13. doi: 10.1002/pro.172.

Abstract

The stabilities of 66 sequence variants of the human Pin1 WW domain have been determined by equilibrium thermal denaturation experiments. All 34 residues composing the hPin1 WW three-stranded beta-sheet structure could be replaced one at a time with at least one different natural or non-natural amino acid residue without leading to an unfolded protein. Alanine substitutions at only four positions within the hPin1 WW domain lead to a partially or completely unfolded protein-in the absence of a physiological ligand. The side chains of these four residues form a conserved, partially solvent-inaccessible, continuous hydrophobic minicore comprising the N- and C-termini. Ala mutations at five other residues, three of which constitute the ligand binding patch on the concave side of the beta-sheet, significantly destabilize the hPin1 WW domain without leading to an unfolded protein. The remaining mutations affect protein stability only slightly, suggesting that only a small subset of side chain interactions within the hPin1 WW domain are mandatory for acquiring and maintaining a stable, cooperatively folded beta-sheet structure.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution / physiology
  • Humans
  • Mutation
  • NIMA-Interacting Peptidylprolyl Isomerase
  • Peptidylprolyl Isomerase / chemistry*
  • Peptidylprolyl Isomerase / genetics
  • Protein Folding
  • Protein Stability
  • Protein Structure, Secondary / physiology
  • Protein Structure, Tertiary / physiology
  • Thermodynamics

Substances

  • NIMA-Interacting Peptidylprolyl Isomerase
  • PIN1 protein, human
  • Peptidylprolyl Isomerase