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Bioinformatics. 2009 Aug 15;25(16):2071-3. doi: 10.1093/bioinformatics/btp356. Epub 2009 Jun 10.

Reordering contigs of draft genomes using the Mauve aligner.

Author information

1
Genome Evolution Laboratory, University of Wisconsin-Madison, 425G Henry Mall Suite 4400V, Madison, WI 53706, USA. rissman@wisc.edu

Abstract

SUMMARY:

Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerful drill-down display allowing detailed exploration of results.

AVAILABILITY:

The software is available for download at http://gel.ahabs.wisc.edu/mauve.

PMID:
19515959
PMCID:
PMC2723005
DOI:
10.1093/bioinformatics/btp356
[Indexed for MEDLINE]
Free PMC Article

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