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Genome Biol. 2009;10(4):R37. doi: 10.1186/gb-2009-10-4-r37. Epub 2009 Apr 19.

Chromatin conformation signatures of cellular differentiation.

Author information

1
Department of Biochemistry and McGill Cancer Center, McGill University, 3655 Promenade Sir-William-Osler, Montréal, H3G1Y6, Canada.

Abstract

One of the major genomics challenges is to better understand how correct gene expression is orchestrated. Recent studies have shown how spatial chromatin organization is critical in the regulation of gene expression. Here, we developed a suite of computer programs to identify chromatin conformation signatures with 5C technology http://Dostielab.biochem.mcgill.ca. We identified dynamic HoxA cluster chromatin conformation signatures associated with cellular differentiation. Genome-wide chromatin conformation signature identification might uniquely identify disease-associated states and represent an entirely novel class of human disease biomarkers.

PMID:
19374771
PMCID:
PMC2688928
DOI:
10.1186/gb-2009-10-4-r37
[Indexed for MEDLINE]
Free PMC Article

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