The crystal structure of UehA in complex with ectoine-A comparison with other TRAP-T binding proteins

J Mol Biol. 2009 May 29;389(1):58-73. doi: 10.1016/j.jmb.2009.03.077. Epub 2009 Apr 10.

Abstract

Substrate-binding proteins or extracellular solute receptors (ESRs) are components of both ABC (ATP binding cassette) and TRAP-T (tripartite ATP-independent periplasmic transporter). The TRAP-T system UehABC from Silicibacter pomeroyi DSS-3 imports the compatible solutes ectoine and 5-hydroxyectoine as nutrients. UehA, the ESR of the UehABC operon, binds both ectoine and 5-hydroxyectoine with high affinity (K(d) values of 1.4+/-0.1 and 1.1+/-0.1 microM, respectively) and delivers them to the TRAP-T complex. The crystal structure of UehA in complex with ectoine was determined at 2.9-A resolution and revealed an overall fold common for all ESR proteins from TRAP systems determined so far. A comparison of the recently described structure of TeaA from Halomonas elongata and an ectoine-binding protein (EhuB) from an ABC transporter revealed a conserved ligand binding mode that involves both directed and cation-pi interactions. Furthermore, a comparison with other known TRAP-T ESRs revealed a helix that might act as a selectivity filter imposing restraints on the ESRs that fine-tune ligand recognition and binding and finally might determine the selection of the cognate substrate.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids, Diamino / chemistry*
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / isolation & purification
  • Binding Sites
  • Biological Transport
  • Crystallography, X-Ray
  • Genome, Bacterial
  • Halomonas / chemistry
  • Kinetics
  • Ligands
  • Models, Molecular
  • Protein Binding
  • Protein Structure, Secondary
  • Rhodobacteraceae / enzymology
  • Rhodobacteraceae / genetics
  • Substrate Specificity

Substances

  • Amino Acids, Diamino
  • Bacterial Proteins
  • Ligands
  • hydroxyectoine
  • ectoine

Associated data

  • PDB/3FXB