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J Magn Reson. 2009 Jun;198(2):236-47. doi: 10.1016/j.jmr.2009.02.014. Epub 2009 Mar 5.

Efficient and accurate estimation of relative order tensors from lambda-maps.

Author information

1
Computer Science and Engineering, University of South Carolina, 315 Main Street, Swearingen Engineering Center, Columbia, SC 29208, USA.

Abstract

The rapid increase in the availability of RDC data from multiple alignment media in recent years has necessitated the development of more sophisticated analyses that extract the RDC data's full information content. This article presents an analysis of the distribution of RDCs from two media (2D-RDC data), using the information obtained from a lambda-map. This article also introduces an efficient algorithm, which leverages these findings to extract the order tensors for each alignment medium using unassigned RDC data in the absence of any structural information. The results of applying this 2D-RDC analysis method to synthetic and experimental data are reported in this article. The relative order tensor estimates obtained from the 2D-RDC analysis are compared to order tensors obtained from the program REDCAT after using assignment and structural information. The final comparisons indicate that the relative order tensors estimated from the unassigned 2D-RDC method very closely match the results from methods that require assignment and structural information. The presented method is successful even in cases with small datasets. The results of analyzing experimental RDC data for the protein 1P7E are presented to demonstrate the potential of the presented work in accurately estimating the principal order parameters from RDC data that incompletely sample the RDC space. In addition to the new algorithm, a discussion of the uniqueness of the solutions is presented; no more than two clusters of distinct solutions have been shown to satisfy each lambda-map.

PMID:
19345125
PMCID:
PMC4071621
DOI:
10.1016/j.jmr.2009.02.014
[Indexed for MEDLINE]
Free PMC Article

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