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Evol Bioinform Online. 2007 Feb 26;1:81-3.

MySSP: non-stationary evolutionary sequence simulation, including indels.

Author information

1
Center for Evolutionary Functional Genomics and the School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA. msr@asu.edu

Abstract

MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of these features can individually be found in existing programs, but have not all have been previously available in a single package.

KEYWORDS:

DNA; Indels; Non-stationarity; Sequence Simulation

PMID:
19325855
PMCID:
PMC2658873

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