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Evol Bioinform Online. 2008 Jun 13;4:203-16.

Electrostatic and functional analysis of the seven-bladed WD beta-propellers.

Author information

1
Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, U.K. nv28@le.ac.uk

Abstract

beta-propeller domains composed of WD repeats are highly ubiquitous and typically used as multi-site docking platforms to coordinate and integrate the activities of groups of proteins. Here, we have used extensive homology modelling of the WD40-repeat family of seven-bladed beta-propellers coupled with subsequent structural classification and clustering of these models to define subfamilies of beta-propellers with common structural, and probable, functional characteristics. We show that it is possible to assign seven-bladed WD beta-propeller proteins into functionally different groups based on the information gained from homology modelling. We examine general structural diversity within the WD40-repeat family of seven-bladed beta-propellers and demonstrate that seven-bladed beta-propellers composed of WD-repeats are structurally distinct from other seven-bladed beta-propellers. We further provide some insights into the multifunctional diversity of the seven-bladed WD beta-propeller surfaces. This report once again reinforces the importance of structural data and the usefulness of homology models in functional classification.

KEYWORDS:

WD protein; electrostatics; evolutionary trace; protein clustering; β-propeller

PMID:
19204818
PMCID:
PMC2614187
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