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Bioinformatics. 2009 Jan 1;25(1):128-9. doi: 10.1093/bioinformatics/btn573. Epub 2008 Nov 10.

Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.

Author information

1
Neurobiologie et Diversité Cellulaire, CNRS UMR7637, Ecole Supérieure de Physique et de Chimie Industrielles, 10 rue Vauquelin, 75005 Paris, France.

Abstract

Oligonucleotide microarray probes are designed to match specific transcripts present in databases that are regularly updated. As a consequence probes should be checked every new database release. We thus developed an informatics tool allowing the semi-automatic update of probe collections of long oligonucleotides and applied it to the mouse RefSeq database.

AVAILABILITY:

http://www.bio.espci.fr/sol/

PMID:
19015129
PMCID:
PMC2638942
DOI:
10.1093/bioinformatics/btn573
[Indexed for MEDLINE]
Free PMC Article

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