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FEBS Lett. 2008 Nov 12;582(27):3811-6. doi: 10.1016/j.febslet.2008.10.016. Epub 2008 Oct 21.

The solute carrier (SLC) complement of the human genome: phylogenetic classification reveals four major families.

Author information

1
Department of Neuroscience, Unit of Functional Pharmacology, Uppsala University, BMC, Uppsala SE 75124, Sweden. robert.fredriksson@neuro.uu.se

Abstract

Solute carriers (SLCs) is the largest group of transporters, embracing transporters for inorganic ions, amino acids, neurotransmitters, sugars, purines and fatty acids among other substrates. We mined the finished assembly of the human genome using Hidden Markov Models (HMMs) obtaining a total of 384 unique SLC sequences. Detailed clustering and phylogenetic analysis of the entire SLC family showed that 15 of the families place into four large phylogenetic clusters with the largest containing eight SLC families, suggesting that many of the distinct families of SLCs have a common evolutionary origin. This study represents the first overall genomic roadmap of the SLCs providing large sequence sets and clarifies the phylogenetic relationships among the families of the second largest group of membrane proteins.

PMID:
18948099
DOI:
10.1016/j.febslet.2008.10.016
[Indexed for MEDLINE]
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