Format

Send to

Choose Destination
Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):15967-72. doi: 10.1073/pnas.0711114105. Epub 2008 Oct 6.

Rapid Virulence Annotation (RVA): identification of virulence factors using a bacterial genome library and multiple invertebrate hosts.

Author information

1
Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom. bssnw@bath.ac.uk

Erratum in

  • Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):2083. Yang, Guowei [added].

Abstract

Current sequence databases now contain numerous whole genome sequences of pathogenic bacteria. However, many of the predicted genes lack any functional annotation. We describe an assumption-free approach, Rapid Virulence Annotation (RVA), for the high-throughput parallel screening of genomic libraries against four different taxa: insects, nematodes, amoeba, and mammalian macrophages. These hosts represent different aspects of both the vertebrate and invertebrate immune system. Here, we apply RVA to the emerging human pathogen Photorhabdus asymbiotica using "gain of toxicity" assays of recombinant Escherichia coli clones. We describe a wealth of potential virulence loci and attribute biological function to several putative genomic islands, which may then be further characterized using conventional molecular techniques. The application of RVA to other pathogen genomes promises to ascribe biological function to otherwise uncharacterized virulence genes.

PMID:
18838673
PMCID:
PMC2572985
DOI:
10.1073/pnas.0711114105
[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for HighWire Icon for PubMed Central
Loading ...
Support Center