A) Epithelia-free explants are microdissected from either the animal cap (e, ectoderm) or the marginal zone (n, notochord; s, somite) of gastrulating embryos (d, dorsal anterior midline; bc, blastocoel) and cultured between two sheets of pre-cast agarose (B). C) In order to collect high resolution confocal time-lapses the tissue is gently compressed under a glass coverslip fragment (g), sandwiched between two sheets of agarose (the lower sheet as thin as 10 microns), glued in place with silicone grease (s). D) A sequence of frames from a confocal time-lapse of fibronectin-rich fibrils (red; labeled by incubation with a non-function blocking monoclonal antibody to Xenopus laevis fibronectin, 4H2, conjugated to the fluorophore Cy3) on the ventral surface of the explant and E) a sequence of frames from the same time-lapses showing a scatter-labeled group of cells expressing RNA encoding a plasma membrane localizing GFP (green; GAP-43 GFP). Small fibronectin-rich spines can be seen forming perpendicular to thick fibrils (arrowheads).