Effect of protein degradation on spot M(r) distribution in 2-D gels--a case study of proteolysis during development of Streptomyces coelicolor cultures

Proteomics. 2008 Jun;8(12):2371-5. doi: 10.1002/pmic.200701075.

Abstract

Proteolysis, a regulated biological process, is reflected by protein spot molecular weight distribution in 2-D gel electrophoretograms. Here we report studies of Streptomyces cultures as they undergo two different developmental processes involving proteolysis. Systematic changes in protein molecular weight distribution between the control samples and those with high activity of proteases were demonstrated. The observations were supported by a numerical model of degradation and its influence on the M(r) distribution. Simple statistics could be used to distinguish between normal and degradative 2-D gel electrophoretic patterns.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / analysis
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Calibration
  • Culture Media
  • Electrophoresis, Gel, Two-Dimensional / methods*
  • Gels
  • Hydrolysis
  • Molecular Weight
  • Peptide Mapping
  • Reference Standards
  • Streptomyces coelicolor / growth & development*
  • Time Factors

Substances

  • Bacterial Proteins
  • Culture Media
  • Gels