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Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W390-8. doi: 10.1093/nar/gkn319. Epub 2008 May 31.

BIOSMILE web search: a web application for annotating biomedical entities and relations.

Author information

1
Institute of Information Science, Academia Sinica, Department of Computer Science, National Tsing-Hua University, Hsinchu, Taiwan, R.O.C.

Abstract

BIOSMILE web search (BWS), a web-based NCBI-PubMed search application, which can analyze articles for selected biomedical verbs and give users relational information, such as subject, object, location, manner, time, etc. After receiving keyword query input, BWS retrieves matching PubMed abstracts and lists them along with snippets by order of relevancy to protein-protein interaction. Users can then select articles for further analysis, and BWS will find and mark up biomedical relations in the text. The analysis results can be viewed in the abstract text or in table form. To date, BWS has been field tested by over 30 biologists and questionnaires have shown that subjects are highly satisfied with its capabilities and usability. BWS is accessible free of charge at http://bioservices.cse.yzu.edu.tw/BWS.

PMID:
18515840
PMCID:
PMC2447743
DOI:
10.1093/nar/gkn319
[Indexed for MEDLINE]
Free PMC Article
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