A single flagellum can be present at one end of the cell (monotrichous); for example, in Vibrio cholerae, Pseudomonas aeruginosa, Idiomarina loihiensis (a) and Caulobacter crescentus (b). Many bacteria have numerous flagella and, if these are co-located on the surface of the cell to form a tuft, the bacterium is lophotrichous; for example, Vibrio fischeri (c) and Spirillum spp. Peritrichous flagella are distributed all over the cell; for example Escherichia coli and Salmonella enterica serovar Typhimurium (d). For spirochaetes, such as species of Borrelia (e), Treponema and Leptospira, a specialized set of flagella are located in the periplasmic space, the rotation of which causes the entire bacterium to move forward in a corkscrew-like motion. Images kindly provided by S.-I. Aizawa, Prefectural University of Hiroshima, Japan.

Shows the structure of the bacterial flagellum as it resides within the cell wall and membranes (). Soluble cytoplasmic components include the FliH–FliI–FliJ ATPase complex, which is thought to deliver a number of the secreted substrates and help determine the order of substrate secretion. The filament protein consists of either FliC or FljB, which are alternately transcribed. The rod cap (FlgJ) and the hook cap (FlgD) are transiently associated with the flagellum during rod and hook polymerization, respectively. FliK is secreted during rod–hook polymerization as a molecular ruler that couples rod–hook length to the flagellar secretion specificity switch at FlhB.

The flhDC operon, or flagellar master operon, is under the control of numerous global regulatory signals that lead to the expression or inhibition of flagellar gene expression. Induction of the class I flhDC operon (class I on) produces FlhD and FlhC, which form a heteromultimeric complex, FlhD₄C₂, that acts to direct σ-dependent transcription from class II flagellar promoters and auto-repress flhDC transcription (class I off; class II on). Class II promoters direct the transcription of genes that are necessary for the structure and assembly of the hook–basal body (HBB) substructure. Upon HBB completion, late secretion substrates are exported from the cell and their cognate chaperones are released to regulate gene expression. FliT is an FlhD₄C₂ factor and prevents both FlhD₄C₂ auto-repression and the activation of class II promoters. The σ transcription factor directs the transcription of class III promoters, which include the filament structural genes and the genes of the chemosensory pathway (class I on; class II off; and class III on). Activation of class I transcription would re-initiate the flagellar regulon for a new round of flagellar gene expression. As drawn, the FliK and FlhA proteins are meant to reside within the C ring. The stoichiometries of Fluke, FlhA, FlhB, FliO, FliP, FliQ and FliR within the C ring are not known.