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J Gen Virol. 2008 Apr;89(Pt 4):1036-42. doi: 10.1099/vir.0.83428-0.

Occurrence, function and evolutionary origins of '2A-like' sequences in virus genomes.

Author information

1
Centre for Biomolecular Sciences, School of Biology, University of St Andrews, North Haugh, St Andrews, UK.

Abstract

2A is an oligopeptide sequence mediating a ribosome 'skipping' effect, producing an apparent 'cleavage' of polyproteins. First identified and characterized in picornaviruses, '2A-like' sequences are found in other mammalian viruses and a wide range of insect viruses. Databases were analysed using a motif conserved amongst 2A/2A-like sequences. The newly identified 2A-like sequences (30 aa) were inserted into a reporter polyprotein to determine their cleavage activity. Our analyses showed that these sequences fall into two categories. The majority mediated very high (complete) cleavage to separate proteins and a few sequences mediated cleavage with lower efficiency, generating appreciable levels of the uncleaved form. Phylogenetic analyses of 2A-like sequences and RNA-dependent RNA polymerases (RdRps) indicated multiple, independent, acquisitions of these sequences at different stages during virus evolution. Within a virus family, 2A sequences are (probably) homologous, but diverge due to other evolutionary pressures. Amongst different families, however, 2A/2A-like sequences appear to be homoplasic.

PMID:
18343847
PMCID:
PMC2885027
DOI:
10.1099/vir.0.83428-0
[Indexed for MEDLINE]
Free PMC Article

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