A novel affinity protein selection system based on staphylococcal cell surface display and flow cytometry

Protein Eng Des Sel. 2008 Apr;21(4):247-55. doi: 10.1093/protein/gzm090. Epub 2008 Jan 31.

Abstract

Here we describe the first reported use of a Gram-positive bacterial system for the selection of affinity proteins from large combinatorial libraries displayed on the surface of Staphylococcus carnosus. An affibody library of 3 x 10(9) variants, based on a 58 residue domain from staphylococcal protein A, was pre-enriched for binding to human tumor necrosis factor-alpha (TNF-alpha) using one cycle of phage display and thereafter transferred to the staphylococcal host ( approximately 10(6) variants). The staphylococcal-displayed library was subjected to three rounds of flow-cytometric sorting, and the selected clones were screened and ranked by on-cell analysis for binding to TNF-alpha and further characterized using biosensor analysis and circular dichroism spectroscopy. The successful sorting yielded three different high-affinity binders (ranging from 95 pM to 2.2 nM) and constitutes the first selection of a novel affinity protein using Gram-positive bacterial display. The method combines the simplicity of working with a bacterial host with the advantages of displaying recombinant proteins on robust Gram-positive bacteria as well as using powerful flow cytometry in the selection and characterization process.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Biosensing Techniques
  • Circular Dichroism
  • Flow Cytometry / methods*
  • Humans
  • Molecular Sequence Data
  • Peptide Library*
  • Protein Binding
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / isolation & purification*
  • Recombinant Fusion Proteins / metabolism*
  • Staphylococcal Protein A / genetics
  • Staphylococcal Protein A / metabolism
  • Staphylococcus / genetics*
  • Staphylococcus / metabolism*
  • Tumor Necrosis Factor-alpha / chemistry
  • Tumor Necrosis Factor-alpha / metabolism*

Substances

  • Peptide Library
  • Recombinant Fusion Proteins
  • Staphylococcal Protein A
  • Tumor Necrosis Factor-alpha