Busulfan-treated (Bu), WT, and cryptorchid (Cr) testis models were evaluated for stem cell activity and gene expression. (A): Macroscopic (top panels; scale bar = 2 mm) and histological (bottom panels; scale bar = 50 μm) examination of Bu (left panels), WT (center panels), and Cr (right panels) testes. Compared to WT testes (92.26 ± 6.33 mg; 35.26 ± 4.1 × 106 cells per testis), Bu and Cr testes were smaller (20.6 ± 0.53 and 23.54 ± 0.62 mg, respectively) and contained fewer cells (1.37 ± 0.17 × 106 and 1.38 ± 0.16 × 106 cells per testis, respectively) because they were nearly devoid of germ cells. Histological sections were stained with hematoxylin and eosin. (B): The spermatogonial stem cell transplantation technique was used to determine the stem cell activity (mean ± SEM) in Bu (0.45 ± 0.13 colonies per 105 cells transplanted), WT (1.55 ± 0.13 colonies per 105 cells transplanted), and Cr (43.30 ± 4.17 colonies per 105 cells transplanted) donor testes. The spermatogonial stem cell transplantation technique has an efficiency of 5%. Therefore, the stem cell concentrations in Bu, WT, and Cr testes were 1 in 11,111 (105 cells transplanted per 0.45 colonies × 5%), 1 in 3,226, and 1 in 115, respectively. Inset, relative stem cell activity in the three testis models is demonstrated by the extent of donor spermatogenesis (blue) produced following transplantation of 500,000 transgenic (lacZ) donor testis cells. Scale bar = 2 mm. (C): Four hypothetical gene expression clusters were predicted on the basis of the morphological and functional (stem cell) analyses in (A) and (B). Gene expression data were organized into clusters predicted to represent somatic cells (WT < Cr, Bu), germ cells (WT > Cr, Bu), stem/ progenitor cluster 1 (Cr > WT, Bu; most specific), and stem/progenitor cluster 2 (Cr > Bu; less restrictive; descriptions given in text). Abbreviation: WT, wild-type.