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Bioinformatics. 2008 Jan 15;24(2):276-8. Epub 2007 Nov 24.

RReportGenerator: automatic reports from routine statistical analysis using R.

Author information

1
Laboratoire de Bioinformatique et Génomique Intégratives, IGBMC, UMR 7104, 67404 Illkirch, France. wolfgang.raffelsberger@igbmc.u-strasbg.fr

Abstract

With the establishment of high-throughput (HT) screening methods there is an increasing need for automatic analysis methods. Here we present RReportGenerator, a user-friendly portal for automatic routine analysis using the statistical platform R and Bioconductor. RReportGenerator is designed to analyze data using predefined analysis scenarios via a graphical user interface (GUI). A report in pdf format combining text, figures and tables is automatically generated and results may be exported. To demonstrate suitable analysis tasks we provide direct web access to a collection of analysis scenarios for summarizing data from transfected cell arrays (TCA), segmentation of CGH data, and microarray quality control and normalization.

AVAILABILITY:

RReportGenerator, a user manual and a collection of analysis scenarios are available under a GNU public license on http://www-bio3d-igbmc.u-strasbg.fr/~wraff

PMID:
18037684
DOI:
10.1093/bioinformatics/btm556
[Indexed for MEDLINE]

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