15N magnetic relaxation study of backbone dynamics of the ribosome-associated cold shock response protein Yfia of Escherichia coli

Acta Biochim Pol. 2007;54(4):769-75. Epub 2007 Oct 31.

Abstract

In the solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia coli in the free state two structural segments can be distinguished: a well structured, rigid N-terminal part displaying a betaalphabetabetabetaalpha topology and a flexible C-terminal tail comprising last 20 amino-acid residues. The backbone dynamics of Yfia protein was studied by (15)N nuclear magnetic relaxation at three magnetic fields and analyzed using model-free approach. The overall diffusional tumbling of the N-terminal part is strongly anisotropic with a number of short stretches showing increased mobility either on a subnanosecond time scale, or a micro- to millisecond time scale, or both. In contrast, the unstructured polypeptide chain of the C-terminal part, which cannot be regarded as a rigid structure, shows the predominance of fast local motions over slower ones, both becoming faster closer to the C-terminus.

MeSH terms

  • Escherichia coli / chemistry
  • Escherichia coli Proteins / chemistry*
  • Magnetic Resonance Spectroscopy / methods*
  • Models, Molecular
  • Nitrogen Isotopes / chemistry
  • Protein Conformation
  • Ribosomal Proteins / chemistry*

Substances

  • Escherichia coli Proteins
  • Nitrogen Isotopes
  • RaiA protein, E coli
  • Ribosomal Proteins