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Nucleic Acids Res. 2008 Jan;36(Database issue):D392-7. Epub 2007 Oct 18.

RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign.

Author information

1
Basic Research Program, SAIC-Frederick and Center for Cancer Research Nanobiology Program, NCI-Frederick, Frederick, MD 21702, USA.

Abstract

We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop-loop interactions. Our database provides a user-friendly way of searching structural elements by PDB code, structural classification, sequence, keyword or inter-helix angles. In addition, the structural data was subjected to energy minimization. This database is useful for analyzing RNA structures as well as for designing novel RNA structures on a nanoscale. The database can be accessed at: http://rnajunction.abcc.ncifcrf.gov/.

PMID:
17947325
PMCID:
PMC2238914
DOI:
10.1093/nar/gkm842
[Indexed for MEDLINE]
Free PMC Article

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