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Protein Pept Lett. 2007;14(6):575-80.

Support vector machine based prediction of glutathione S-transferase proteins.

Author information

1
Bioinformatics Center, Institute of Microbial Technology, Chandigarh, India.

Abstract

Glutathione S-transferase (GST) proteins play vital role in living organism that includes detoxification of exogenous and endogenous chemicals, survivability during stress condition. This paper describes a method developed for predicting GST proteins. We have used a dataset of 107 GST and 107 non-GST proteins for training and the performance of the method was evaluated with five-fold cross-validation technique. First a SVM based method has been developed using amino acid and dipeptide composition and achieved the maximum accuracy of 91.59% and 95.79% respectively. In addition we developed a SVM based method using tripeptide composition and achieved maximum accuracy 97.66% which is better than accuracy achieved by HMM based searching (96.26%). Based on above study a web-server GSTPred has been developed (http://www.imtech.res.in/raghava/gstpred/).

PMID:
17627599
[Indexed for MEDLINE]

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