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Genome Biol. 2007;8(5):R81.

Tilescope: online analysis pipeline for high-density tiling microarray data.

Author information

1
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA. zhengdong.zhang@yale.edu

Abstract

We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data http://tilescope.gersteinlab.org. In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis.

PMID:
17501994
PMCID:
PMC1929149
DOI:
10.1186/gb-2007-8-5-r81
[Indexed for MEDLINE]
Free PMC Article

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