Molecular basis of coiled-coil formation

Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):7062-7. doi: 10.1073/pnas.0700321104. Epub 2007 Apr 16.

Abstract

Coiled coils have attracted considerable interest as design templates in a wide range of applications. Successful coiled-coil design strategies therefore require a detailed understanding of coiled-coil folding. One common feature shared by coiled coils is the presence of a short autonomous helical folding unit, termed "trigger sequence," that is indispensable for folding. Detailed knowledge of trigger sequences at the molecular level is thus key to a general understanding of coiled-coil formation. Using a multidisciplinary approach, we identify and characterize here the molecular determinants that specify the helical conformation of the monomeric early folding intermediate of the GCN4 coiled coil. We demonstrate that a network of hydrogen-bonding and electrostatic interactions stabilize the trigger-sequence helix. This network is rearranged in the final dimeric coiled-coil structure, and its destabilization significantly slows down GCN4 leucine zipper folding. Our findings provide a general explanation for the molecular mechanism of coiled-coil formation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Substitution
  • Arginine
  • Basic-Leucine Zipper Transcription Factors
  • DNA-Binding Proteins / chemistry*
  • DNA-Binding Proteins / metabolism
  • Hydrogen-Ion Concentration
  • Kinetics
  • Leucine Zippers*
  • Magnetic Resonance Spectroscopy
  • Mutant Proteins / chemistry
  • Peptides / chemistry
  • Protein Folding
  • Saccharomyces cerevisiae Proteins / chemistry*
  • Saccharomyces cerevisiae Proteins / metabolism
  • Solutions
  • Thermodynamics
  • Transcription Factors / chemistry*
  • Transcription Factors / metabolism

Substances

  • Basic-Leucine Zipper Transcription Factors
  • DNA-Binding Proteins
  • GCN4 protein, S cerevisiae
  • Mutant Proteins
  • Peptides
  • Saccharomyces cerevisiae Proteins
  • Solutions
  • Transcription Factors
  • Arginine

Associated data

  • PDB/2OVN