The unfolding pathway for Apo Escherichia coli aspartate aminotransferase is dependent on the choice of denaturant

Biochemistry. 2007 May 15;46(19):5810-8. doi: 10.1021/bi602621t. Epub 2007 Apr 11.

Abstract

The guanidine hydrochloride (GdnHCl) mediated denaturation pathway for the apo form of homodimeric Escherichia coli aspartate aminotransferase (eAATase) (molecular mass = 43.5 kDa/monomer) includes a partially folded monomeric intermediate, M* [Herold, M., and Kirschner, K. (1990) Biochemistry 29, 1907-1913; Birolo, L., Dal Piaz, F., Pucci, P., and Marino, G. (2002) J. Biol. Chem. 277, 17428-17437]. The present investigation of the urea-mediated denaturation of eAATase finds no evidence for an M* species but uncovers a partially denatured dimeric form, D*, that is unpopulated in GdnHCl. Thus, the unfolding process is a function of the employed denaturant. D* retains less than 50% of the native secondary structure (circular dichroism), conserves significant quaternary and tertiary interactions, and unfolds cooperatively (mD*<==>U = 3.4 +/- 0.3 kcal mol-1 M-1). Therefore, the following equilibria obtain in the denaturation of apo-eAATase: D <==> 2M 2M* <==> 2U in GdnHCl and D <==> D* <==> 2U in urea (D = native dimer, M = folded monomer, and U = unfolded state). The free energy of unfolding of apo-eAATase (D <==> 2U) is 36 +/- 3 kcal mol-1, while that for the D* 2U transition is 24 +/- 2 kcal mol-1, both at 1 M standard state and pH 7.5.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Apoenzymes / chemistry*
  • Aspartate Aminotransferases / chemistry*
  • Circular Dichroism
  • Escherichia coli / enzymology
  • Guanidine / pharmacology*
  • Protein Denaturation / drug effects*
  • Protein Folding
  • Protein Structure, Quaternary
  • Spectrometry, Fluorescence
  • Temperature
  • Urea / pharmacology*

Substances

  • Apoenzymes
  • Urea
  • Aspartate Aminotransferases
  • Guanidine