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EMBO J. 2007 Apr 4;26(7):1984-94. Epub 2007 Mar 15.

Structural framework for DNA translocation via the viral portal protein.

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1
York Structural Biology Laboratory, Department of Chemistry, University of York, York, UK.

Abstract

Tailed bacteriophages and herpesviruses load their capsids with DNA through a tunnel formed by the portal protein assembly. Here we describe the X-ray structure of the bacteriophage SPP1 portal protein in its isolated 13-subunit form and the pseudoatomic structure of a 12-subunit assembly. The first defines the DNA-interacting segments (tunnel loops) that pack tightly against each other forming the most constricted part of the tunnel; the second shows that the functional dodecameric state must induce variability in the loop positions. Structural observations together with geometrical constraints dictate that in the portal-DNA complex, the loops form an undulating belt that fits and tightly embraces the helical DNA, suggesting that DNA translocation is accompanied by a 'mexican wave' of positional and conformational changes propagating sequentially along this belt.

PMID:
17363899
PMCID:
PMC1847669
DOI:
10.1038/sj.emboj.7601643
[Indexed for MEDLINE]
Free PMC Article
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