The bacteriophage phi 29 DNA polymerase, a proofreading enzyme

J Biol Chem. 1992 Feb 5;267(4):2594-9.

Abstract

The bacteriophage phi 29 DNA polymerase, involved both in the protein-primed initiation and elongation steps of the viral DNA replication, displays a very processive 3',5'-exonuclease activity acting preferentially on single-stranded DNA. This exonucleolytic activity showed a marked preference for excision of a mismatched versus a correctly paired 3' terminus. These characteristics enable the phi 29 DNA polymerase to act as a proofreading enzyme. A comparative analysis of the wild-type phi 29 DNA polymerase and a mutant lacking 3',5'-exonuclease activity indicated that a productive coupling between the exonuclease and polymerase activities is necessary to prevent fixation of polymerization errors. Based on these data, the phi 29 DNA polymerase, a model enzyme for protein-primed DNA replication, appears to share the same mechanism for the editing function as that first proposed for T4 DNA polymerase and Escherichia coli DNA polymerase I on the basis of functional and structural studies.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Bacteriophages / enzymology*
  • Bacteriophages / genetics
  • Base Sequence
  • Binding Sites
  • DNA Replication*
  • DNA, Single-Stranded / metabolism
  • DNA, Viral / biosynthesis
  • DNA, Viral / metabolism
  • DNA-Directed DNA Polymerase / metabolism*
  • Electrophoresis, Polyacrylamide Gel
  • Exodeoxyribonuclease V
  • Exodeoxyribonucleases / metabolism
  • Molecular Sequence Data
  • Temperature

Substances

  • DNA, Single-Stranded
  • DNA, Viral
  • DNA-Directed DNA Polymerase
  • Exodeoxyribonucleases
  • Exodeoxyribonuclease V