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Nucleic Acids Res. 2007 Jan;35(Database issue):D339-42. Epub 2006 Dec 7.

Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes.

Author information

1
Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics and Sokendai, Shizuoka, Japan.

Abstract

Genome Information Broker for Viruses (GIB-V) is a comprehensive virus genome/segment database. We extracted 18 418 complete virus genomes/segments from the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc.org/) by DNA Data Bank of Japan (DDBJ), EMBL and GenBank and stored them in our system. The list of registered viruses is arranged hierarchically according to taxonomy. Keyword searches can be performed for genome/segment data or biological features of any virus stored in GIB-V. GIB-V is equipped with a BLAST search function, and search results are displayed graphically or in list form. Moreover, the BLAST results can be used online with the ClustalW feature of the DDBJ. All available virus genome/segment data can be collected by the GIB-V download function. GIB-V can be accessed at no charge at http://gib-v.genes.nig.ac.jp/.

PMID:
17158166
PMCID:
PMC1781101
DOI:
10.1093/nar/gkl1004
[Indexed for MEDLINE]
Free PMC Article

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