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Bioinformatics. 2007 Feb 1;23(3):392-3. Epub 2006 Nov 30.

BioNetBuilder: automatic integration of biological networks.

Author information

  • 1Department of Biology, New York University, New York, NY, USA. iliana_avila-campillo@merck.com

Abstract

BioNetBuilder is an open-source client-server Cytoscape plugin that offers a user-friendly interface to create biological networks integrated from several databases. Users can create networks for approximately 1500 organisms, including common model organisms and human. Currently supported databases include: DIP, BIND, Prolinks, KEGG, HPRD, The BioGrid and GO, among others. The BioNetBuilder plugin client is available as a Java Webstart, providing a platform-independent network interface to these public databases.

AVAILABILITY:

http://err.bio.nyu.edu/cytoscape/bionetbuilder/

PMID:
17138585
DOI:
10.1093/bioinformatics/btl604
[PubMed - indexed for MEDLINE]
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