Crystal structures of E. coli CcmG and its mutants reveal key roles of the N-terminal beta-sheet and the fingerprint region

Proteins. 2006 Dec 1;65(4):1021-31. doi: 10.1002/prot.21184.

Abstract

CcmG, also designated DsbE, functions as a periplasmic protein thiol:disulfide oxidoreductase and is required for cytochrome c maturation. Here we report the crystal structures of Escherichia coli CcmG and its two mutants, P144A and the N-terminal fifty seven-residue deletion mutant, and two additional deletion mutants were studied by circular dichroism. Structural comparison of E. coli CcmG with its deletion mutants reveals that the N-terminal beta-sheet is essential for maintaining the folding topology and consequently maintaining the active-site structure of CcmG. Pro144 and Glu145 are key residues of the fingerprint region of CcmG. Pro144 is in cis-configuration, and it makes van der Waals interactions with the active-site disulfide Cys80-Cys83 and forms a C--H...O hydrogen bond with Thr82, helping stabilize the active-site structure. Glu145 forms a salt-bridge and hydrogen-bond network with other residues of the fingerprint region and with Arg158, further stabilizing the active-site structure. The cis-configuration of Pro144 makes the backbone nitrogen and oxygen of Ala143 exposed to solvent, favorable for interacting with binding partners. The key role of cis-Pro144 is verified by the P144A mutant, which contains trans-Ala144 and displays redox property changes. Structural comparison of E. coli CcmG with the recently reported structure of CcmG in complex with the N-terminal domain of DsbD reveals that Tyr141 undergoes conformational changes upon binding DsbD. A cis-proline located at the N-terminus of the first beta-strand of the betabetaalpha motif of the thioredoxin-like domain is a conserved structural feature of the thioredoxin superfamily.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Circular Dichroism
  • Crystallography, X-Ray
  • Cysteine / chemistry
  • Cysteine / metabolism
  • Escherichia coli / enzymology
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / genetics
  • Glutamic Acid / chemistry
  • Glutamic Acid / metabolism
  • Models, Molecular
  • Molecular Sequence Data
  • Oxidation-Reduction
  • Protein Conformation
  • Protein Disulfide Reductase (Glutathione) / chemistry*
  • Protein Disulfide Reductase (Glutathione) / genetics
  • Protein Folding
  • Sequence Alignment
  • Structure-Activity Relationship
  • Tyrosine / chemistry
  • Tyrosine / metabolism

Substances

  • Escherichia coli Proteins
  • Glutamic Acid
  • Tyrosine
  • Ccmg protein, E coli
  • Protein Disulfide Reductase (Glutathione)
  • Cysteine

Associated data

  • PDB/2B1K
  • PDB/2B1L
  • PDB/2G0F