Format

Send to

Choose Destination
J Math Biol. 2006 Dec;53(6):905-37. Epub 2006 Sep 2.

A generalized model of the repressilator.

Author information

1
Johann Radon Institute for Computational and Applied Mathematics, Austrian Academy of Sciences, Altenbergerstrasse 69, 4040 Linz, Austria. stefan.mueller@oeaw.ac.at

Abstract

The repressilator is a regulatory cycle of n genes where each gene represses its successor in the cycle: [see text]. The system is modelled by ODEs for an arbitrary number of identical genes and arbitrarily strong repressor binding. A detailed mathematical analysis of the dynamical behavior is provided for two model systems: (i) a repressilator with leaky transcription and single-step cooperative repressor binding, and (ii) a repressilator with auto-activation and cooperative regulator binding. Genes are assumed to be present in constant amounts, transcription and translation are modelled by single-step kinetics, and mRNAs as well as proteins are assumed to be degraded by first order reactions. Several dynamical patterns are observed: multiple steady states, periodic and aperiodic oscillations corresponding to limit cycles and heteroclinic cycles, respectively. The results of computer simulations are complemented by a detailed and complete stability analysis of all equilibria and of the heteroclinic cycle.

PMID:
16951971
DOI:
10.1007/s00285-006-0035-9
[Indexed for MEDLINE]

Supplemental Content

Full text links

Icon for Springer
Loading ...
Support Center