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Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W385-8.

Virtual Ribosome--a comprehensive DNA translation tool with support for integration of sequence feature annotation.

Author information

1
Center for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark, Building 208, DK-2800 Lyngby, Denmark. raz@cbs.dtu.dk

Abstract

Virtual Ribosome is a DNA translation tool with two areas of focus. (i) Providing a strong translation tool in its own right, with an integrated ORF finder, full support for the IUPAC degenerate DNA alphabet and all translation tables defined by the NCBI taxonomy group, including the use of alternative start codons. (ii) Integration of sequences feature annotation--in particular, native support for working with files containing intron/exon structure annotation. The software is available for both download and online use at http://www.cbs.dtu.dk/services/VirtualRibosome/.

PMID:
16845033
PMCID:
PMC1538826
DOI:
10.1093/nar/gkl252
[Indexed for MEDLINE]
Free PMC Article

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